| _anneal_file (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _anneal_out (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _anneal_summary_file (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _anneal_summary_out (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _b (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _beta (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _chain_file (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _chain_out (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _ckpt_file (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _ckpt_stride (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _ckpt_stride_deo (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _comm (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _current_length (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _current_round (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _default_cpu_distribution (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _dimension (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _E_Num (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _initial (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _initial_spacing (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _L (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _L_tmp (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _no_initial_ladder (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _old_annealing_file (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _output_precision (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _R (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _rank (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _restart (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _rng (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _sampler (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _sampler_file (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _sampler_out (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _seed (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _state_file (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _state_out (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _step_count (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _sum_lklhd (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _swap_stride (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _TNum (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| _var_names (defined in sampler_MCMC_base) | sampler_MCMC_base | protected |
| _write_all (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| close_streams() | sampler_MCMC_base | inline |
| deo_swap(const bool even_swap, const int round, const int swap) (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| E_COMM (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| E_rank (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| E_size (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| estimate_bayesian_evidence(double avg_lklhd[], double beta[]) | sampler_deo_tempering_MCMC< S > | |
| find_best_fit(std::string chain_file, std::string state_file) const | sampler_deo_tempering_MCMC< S > | inlinevirtual |
| find_best_fit() const | sampler_deo_tempering_MCMC< S > | inlinevirtual |
| find_beta(Interpolator1D &fLambda, int k, double Lambda, double eps=1e-12, int MAX_ITR=1e8) (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| finish_deo_round(int rank, int round, double avg_lklhd[]) (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| generate_transitions(int niterations, int start, int finish, int thin, int refresh, int verbosity) (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| get_chain_state(std::vector< double > &chain, std::vector< double > &state) (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | inlinevirtual |
| get_likelihood_sum() (defined in sampler_MCMC_base) | sampler_MCMC_base | inline |
| get_rand() (defined in sampler_MCMC_base) | sampler_MCMC_base | inlinevirtual |
| get_round() const | sampler_deo_tempering_MCMC< S > | inline |
| get_sampler() | sampler_deo_tempering_MCMC< S > | inline |
| initialize_ladder() (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| initialize_mpi() (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| mpi_cleanup() | sampler_deo_tempering_MCMC< S > | |
| read_checkpoint(std::istream &ckpt_in) | sampler_deo_tempering_MCMC< S > | inlinevirtual |
| read_checkpoint(std::string ckpt_file) | sampler_deo_tempering_MCMC< S > | virtual |
| read_initial_ladder(std::string annealing_file) | sampler_deo_tempering_MCMC< S > | |
| Req (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| Req2 (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| reset_likelihood_sum() (defined in sampler_MCMC_base) | sampler_MCMC_base | inline |
| reset_rng_seed(int seed) (defined in sampler_MCMC_base) | sampler_MCMC_base | inlinevirtual |
| reset_sampler_step() (defined in sampler_MCMC_base) | sampler_MCMC_base | inlinevirtual |
| run_deo_round(int round, int nlength, int thin, int refresh, int verbosity, bool &even_swap, double avg_lklhd[]) (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| run_sampler(int number_of_rounds, int thin, int refresh, int verbosity=0) | sampler_deo_tempering_MCMC< S > | virtual |
| sampler_deo_tempering_MCMC(int seed, likelihood_power_tempered &L, std::vector< std::string > var_names, size_t dimension) | sampler_deo_tempering_MCMC< S > | |
| sampler_MCMC_base(int seed, likelihood &L, std::vector< std::string > var_names, size_t dimension) (defined in sampler_MCMC_base) | sampler_MCMC_base | |
| set_annealing_output(std::string annealing_file, std::string annealing_summary_file="") | sampler_deo_tempering_MCMC< S > | inline |
| set_annealing_schedule(double initial_spacing, int geometric_increase=2) | sampler_deo_tempering_MCMC< S > | |
| set_chain_state(std::vector< double > chain, std::vector< double > state) (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | inlinevirtual |
| set_checkpoint(int ckpt_stride, std::string ckpt_file) (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | |
| set_cpu_distribution(int num_temperatures, int num_exploration) | sampler_deo_tempering_MCMC< S > | |
| set_deo_round_params(int initial_length, int swap_stride) | sampler_deo_tempering_MCMC< S > | |
| set_initial_location(std::vector< double > initial_parameters) (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | virtual |
| set_mpi_communicator(MPI_Comm comm) | sampler_MCMC_base | |
| set_output_stream(std::string chain_file, std::string state_file, std::string sampler_file, int output_precision=8) | sampler_deo_tempering_MCMC< S > | virtual |
| Stat (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| Stat2 (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| T_COMM (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| T_rank (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| T_size (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| update_annealing_params() (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| write_annealing_headers() (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | private |
| write_chain_header() (defined in sampler_MCMC_base) | sampler_MCMC_base | protectedvirtual |
| write_checkpoint(std::string file) (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | |
| write_checkpoint(std::ostream &file) (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | virtual |
| write_state() (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | inlineprivatevirtual |
| write_state_header() (defined in sampler_MCMC_base) | sampler_MCMC_base | protectedvirtual |
| ~sampler_deo_tempering_MCMC() (defined in sampler_deo_tempering_MCMC< S >) | sampler_deo_tempering_MCMC< S > | inline |
| ~sampler_MCMC_base() (defined in sampler_MCMC_base) | sampler_MCMC_base | inline |
