sampler_stan_adapt_dense_e_nuts_MCMC Member List

This is the complete list of members for sampler_stan_adapt_dense_e_nuts_MCMC, including all inherited members.

_adaptation (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
_chain_file (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_chain_out (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_ckpt_file (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_ckpt_stride (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_comm (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_current_sample (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
_dimension (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_init_buffer (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
_initial (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
_inverse_metric (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
_L (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_logger (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
_nadapt (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
_output_precision (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_rank (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_restart (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
_rng (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_sampler_file (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_sampler_out (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_save_adaptation (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
_seed (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_stan_model (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
_stan_rng (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
_stan_sampler (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
_start_stepsampler_stan_adapt_dense_e_nuts_MCMCprivate
_state_file (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_state_out (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_step_count (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_sum_lklhd (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_term_buffer (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
_var_names (defined in sampler_MCMC_base)sampler_MCMC_baseprotected
_window (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
close_streams()sampler_MCMC_baseinline
find_best_fit(std::string chain_file, std::string state_file) const sampler_MCMC_basevirtual
find_best_fit() const sampler_MCMC_basevirtual
generate_transition(int step, int start, int finish, int nthin, int refresh, bool adaptation, bool save, int verbosity) (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
get_chain_state(std::vector< double > &parameters, std::vector< double > &sample_state) (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCvirtual
get_likelihood_sum() (defined in sampler_MCMC_base)sampler_MCMC_baseinline
get_rand() (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCinlinevirtual
read_checkpoint(std::string ckpt_file)sampler_stan_adapt_dense_e_nuts_MCMCinlinevirtual
read_checkpoint(std::istream &ckpt_in) (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCvirtual
reset_likelihood_sum() (defined in sampler_MCMC_base)sampler_MCMC_baseinline
reset_rng_seed(int seed) (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCvirtual
reset_sampler_step() (defined in sampler_MCMC_base)sampler_MCMC_baseinlinevirtual
run_sampler(int nsteps, int thin, int refresh, int verbosity=1) (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCvirtual
sampler_MCMC_base(int seed, likelihood &L, std::vector< std::string > var_names, size_t dimension) (defined in sampler_MCMC_base)sampler_MCMC_base
sampler_stan_adapt_dense_e_nuts_MCMC(int seed, likelihood &L, std::vector< std::string > var_names, size_t dimension) (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMC
set_adaptation_parameters(int num_adapt, bool save_adapt)sampler_stan_adapt_dense_e_nuts_MCMC
set_chain_state(std::vector< double > model_values, std::vector< double > state_values) (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCvirtual
set_checkpoint(int ckpt_stride, std::string ckpt_file)sampler_MCMC_base
set_delta(double delta)sampler_stan_adapt_dense_e_nuts_MCMC
set_gamma(double gamma)sampler_stan_adapt_dense_e_nuts_MCMC
set_initial_inverse_metric(Eigen::MatrixXd inverse_metric)sampler_stan_adapt_dense_e_nuts_MCMC
set_initial_location(std::vector< double > initial_parameters) (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCvirtual
set_kappa(double kappa)sampler_stan_adapt_dense_e_nuts_MCMC
set_max_depth(int max_depth)sampler_stan_adapt_dense_e_nuts_MCMC
set_mpi_communicator(MPI_Comm comm)sampler_MCMC_base
set_output_stream(std::string chain_name, std::string state_name, std::string sampler_name, int output_precision=8)sampler_MCMC_basevirtual
set_stepsize(double step_size)sampler_stan_adapt_dense_e_nuts_MCMC
set_t0(double t0)sampler_stan_adapt_dense_e_nuts_MCMC
set_window_parameters(unsigned int init_buffer, unsigned int term_buffer, unsigned int window)sampler_stan_adapt_dense_e_nuts_MCMC
write_chain_header() (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivatevirtual
write_checkpoint(std::ostream &) (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCvirtual
write_sampler_header() (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivate
write_state() (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivatevirtual
write_state_header() (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCprivatevirtual
~sampler_MCMC_base() (defined in sampler_MCMC_base)sampler_MCMC_baseinline
~sampler_stan_adapt_dense_e_nuts_MCMC() (defined in sampler_stan_adapt_dense_e_nuts_MCMC)sampler_stan_adapt_dense_e_nuts_MCMCinline